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Funding Update: Jan 23, 2009

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Assembly and analysis software for exploring the human microbiome
Principal investigator: Mihai Pop
Institution: University of Maryland College Park
Start date: Sept. 24, 2008
Expires: July 31, 2011
Amount (FY 2008): $260,000
NIH institute: NHGRI


Visualization and Analysis of the TCGA data using the UCSC Cancer Genomics Browser
Principal investigator: David Haussler
Institution: University of California Santa Cruz
Start date: Sept. 24, 2008
Expires: Aug. 31, 2010
Amount (FY 2008): $215,094
NIH institute: NCI


Gene Mapping of complex traits using resequencing data
Principal investigator: Goncalo Abecasis
Institution: University of Michigan at Ann Arbor
Start date: Sept. 25, 2008
Expires: June 30, 2011
Amount (FY 2008): $366,403
NIH institute: NIMH


Fragment assembly and metabolic/species diversity analysis for human microbiome
Principal investigator: Yuzhen Ye
Institution: Indiana University Bloomington
Start date: Sept. 26, 2008
Expires: July 31, 2011
Amount (FY 2008): $256,120
NIH institute: NHGRI


Software & hardware inference engines for automated determination of primary cell
Principal investigator: Garry Nolan
Institution: Stanford University
Start date: Sept. 26, 2008
Expires: July 31, 2012
Amount (FY 2008): $1,671,372
NIH institute: NCI


Toolkit for whole transcriptome analysis of neural tissues
Principal investigator: Jonathan Buckley
Institution: Epicenter Software
Start date: Sept. 30, 2008
Expires: Aug. 31, 2010
Amount (FY 2008): $145,388
NIH institute: NINDS


Integrative probabilistic models for identifying transcriptional modules
Principal investigator: Mario Medvedovic
Institution: University of Cincinnati
Start date: Sept. 30, 2008
Expires: Sept. 29, 2010
Amount (FY 2008): $198,000
NIH institute: NLM


Development of a highly automated microarray data analysis system
Principal investigator: Yuerong Zhu
Institution: BioinfRx
Start date: Sept. 30, 2008
Expires: Sept. 29, 2010
Amount (FY 2008): $150,182
NIH institute: NLM


CONNJUR: A software integration platform for biomolecular NMR spectroscopy
Principal investigator: Michael Gryk
Institution: University of Connecticut
Start date: Dec. 1, 2008
Expires: Nov. 30, 2012
Amount (FY 2008): NA
NIH institute: NIGMS


Development and Maintenance of the MEAD software suite
Principal investigator: Donald Bashford
Institution: St. Jude Children's Research Hospital
Start date: Dec. 1, 2008
Expires: Nov. 30, 2012
Amount (FY 2008): NA
NIH institute: NIGMS


Protein recognition for modular domains
Principal investigator: Wei Wang
Institution: University of California San Diego
Start date: Dec. 1, 2008
Expires: Nov. 30, 2012
Amount (FY 2008): NA
NIH institute: NIGMS


Aspergillus genome database
Principal investigator: Gavin Sherlock
Institution: Stanford University
Start date: Dec. 5, 2008
Expires: Nov. 30, 2013
Amount (FY 2008): NA
NIH institute: NIAID


Computational discovery and analysis of community structures in biology networks
Principal investigator: Jianhua Ruan
Institution: University of Texas San Antonio
Start date: Jan. 1, 2009
Expires: Dec. 31, 2012
Amount (FY 2008): NA
NIH institute: NIGMS


Structural dynamics of biomolecular systems
Principal investigator: Ivet Bahar
Institution: University of Pittsburgh
Start date: Jan. 1, 2009
Expires: Dec. 31, 2012
Amount (FY 2008): NA
NIH institute: NIGMS


Computational framework for analysis of microarray gene expression data
Principal investigator: Dariusz Wroblewski
Institution: Bioformatix
Start date: Jan. 1, 2009
Expires: Dec. 31, 2010
Amount (FY 2008): NA
NIH institute: NIGMS


Algorithmically-tuned protein families, rule-base and characterized proteins
Principal investigator: Daniel Haft
Institution: J. Craig Venter Institute
Start date: Sept. 26, 2008
Expires: July 31, 2011
Amount (FY 2008): $524,724
NIH institute: NHGRI


Robust methods for the efficient analysis and integration of DNA sequence data
Principal investigator: Andrews Allen
Institution: Duke University
Start date: Sept. 26, 2008
Expires: June 30, 2011
Amount (FY 2008): NA
NIH institute: NIMH


Providing peptide atlas based services through the caGRID infrastructure
Principal investigator: John Boyle
Institution: Institute for Systems Biology
Start date: Jan. 1, 2009
Expires: June 30, 2011
Amount (FY 2008): NA
NIH institute: NCI


Public/Private collaboration for high-quality protein-ligand data
Principal investigator: Heather Carlson
Institution: University of Michigan at Ann Arbor
Start date: Sept. 29, 2008
Expires: Aug. 31, 2013
Amount (FY 2008): $1,016,449
NIH institute: NIGMS


Bayesian dynamic genome scale modeling of HDL cholesterol transport
Principal investigator: Rachael Hageman
Institution: Jackson Laboratory
Start date: June 15, 2009
Expires: NA
Amount (FY 2008): NA
NIH institute: NHLBI


Bio-Informatics research network coordinating center
Principal investigator: Carl Kesselman
Institution: University of Southern California
Start date: Dec. 15, 2008
Expires: Nov. 30, 2013
Amount (FY 2008): NA
NIH institute: NCRR

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The Scan

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Booster Decision Expected

The New York Times reports the US Food and Drug Administration is expected to authorize a booster dose of the Pfizer-BioNTech SARS-CoV-2 vaccine this week for individuals over 65 or at high risk.

Snipping HIV Out

The Philadelphia Inquirer reports Temple University researchers are to test a gene-editing approach for treating HIV.

PLOS Papers on Cancer Risk Scores, Typhoid Fever in Colombia, Streptococcus Protection

In PLOS this week: application of cancer polygenic risk scores across ancestries, genetic diversity of typhoid fever-causing Salmonella, and more.