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February 2014 Bioinformatics Papers of Note


Berry CC1, Bushman FD, et al.
Comparing DNA integration site clusters with scan statistics.
Bioinformatics. 2014 Feb 14. [Epub ahead of print]

Carin L, Lucas J, et al.
Bayesian joint analysis of heterogeneous genomics data.
Bioinformatics. 2014 Feb 21. [Epub ahead of print]

Monacell JT1, Carbone I.
Mobyle SNAP Workbench: a web-based analysis portal for population genetics and evolutionary genomics.
Bioinformatics. 2014 Feb 20. [Epub ahead of print]

Chen ZX, Chen KX, et al.
Multi-algorithm and multi-model based drug target prediction and web server.
Acta Pharmacol Sin. 2014 Feb 3. doi: 10.1038/aps.2013.153. [Epub ahead of print]

Al Mansoori S, Beatson SA, et al.
uPEPperoni: an online tool for upstream open reading frame location and analysis of transcript conservation.
BMC Bioinformatics. 2014 Feb 1;15:36. doi: 10.1186/1471-2105-15-36.

Bach F, Boeva V, et al.
SegAnnDB: interactive web-based genomic segmentation.
Bioinformatics. 2014 Feb 3. [Epub ahead of print]

Agostini F, Bolognesi B, et al.
The cleverSuite Approach for Protein Characterization: Predictions of Structural Properties, Solubility, Chaperone Requirements and RNA-Binding Abilities.
Bioinformatics. 2014 Feb 3. [Epub ahead of print]

Blake JA, Bianchi DW, et al.
DFLAT: functional annotation for human development.
BMC Bioinformatics. 2014 Feb 7;15:45. doi: 10.1186/1471-2105-15-45.

Eren AM, Huse SM, et al.
VAMPS: a website for visualization and analysis of microbial population structures.
BMC Bioinformatics. 2014 Feb 5;15:41. doi: 10.1186/1471-2105-15-41.

Gupta S, Panda B, et al.
SInC: an accurate and fast error-model based simulator for SNPs, Indels and CNVs coupled with a read generator for short-read sequence data.
BMC Bioinformatics. 2014 Feb 5;15:40. doi: 10.1186/1471-2105-15-40.

Mielke CJ1, Mandarino LJ, Dinu V.
AMASS: a database for investigating protein structures.
Bioinformatics. 2014 Feb 26. [Epub ahead of print]

Burns KH, Halper-Stromberg E, et al.
Visualization and probability-based scoring of structural variants within repetitive sequences.
Bioinformatics. 2014 Feb 21. [Epub ahead of print]

Lao O, Liu F, Wollstein A, Kayser M.
GAGA: A New Algorithm for Genomic Inference of Geographic AncestryReveals Fine Level Population Substructure in Europeans.
PLoS Comput Biol. 2014 Feb 20;10(2):e1003480.

Jia P, Zhao Z.
VarWalker: Personalized Mutation Network Analysis of Putative CancerGenes from Next-Generation Sequencing Data.
PLoS Comput Biol. 2014 Feb 6;10(2):e1003460.

Colwill K, Creixell P, et al.
CoreFlow: A computational platform for integration, analysis and modeling of complex biological data.
J Proteomics. 2014 Feb 3. [Epub ahead of print]

Tuzhikov A, Panchin A, Shestopalov VI.
TUIT, a BLAST-based tool for taxonomic classification of nucleotide sequences.
Biotechnoiques 2014 Feb 1;56(2):78-84. doi: 10.2144/000114135.

Hatje K, Kollmar M.
Kassiopeia: a database and web application for the analysis of mutually exclusive exomes of eukaryotes.
BMC Genomics. 2014 Feb 10;15:115. doi: 10.1186/1471-2164-15-115.

Barhdadi A, Dubé MP, et al.
Comparison of genotype clustering tools with rare variants.
BMC Bioinformatics. 2014 Feb 21;15(1):52. [Epub ahead of print]

Du R, Jin L, et al.
Evaluation of copy number variation detection for a SNP array platform.
BMC Bioinformatics. 2014 Feb 21;15(1):50. [Epub ahead of print]

Pullen N, Morris RJ.
Bayesian model comparison and parameter inference in systems biology using nested sampling.
PLoS One. 2014 Feb 11;9(2):e88419. doi: 10.1371/journal.pone.0088419.

Altay G, Kurt Z, Dehmer M, Emmert-Streib F.
Netmes: assessing gene network inference algorithms by network-based measures.
Evol Bioinform Online. 2014 Feb 6;10:1-9. doi: 10.4137/EBO.S13481.

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