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Downloads and Upgrades: Sequence Viewer 3.2, UCSC Genome Browser, GeneMarker, and more


The National Center for Biotechnology Information has updated its Sequence Viewer tool.

Version 3.2 includes support for multi-track upload, improved display of long track titles, as well as improved tooltips for variation features. A full list of new features, improvements and fixes is available in the release notes.

The Genome Brower group at the University of California, Santa Cruz has released a new browser for the elephant shark (Callorhinchus milii).

Bulk downloads of the sequence and annotation data are available via ftp or from the downloads page.

SoftGenetics has launched a new version of its GeneMarker software.

This version of the software now includes an integrated replicate comparison tool that automatically replicates project samples and flags discordant allele calls. It also includes a linked navigation tool that lets users view electropherograms of replicates with discordant allele calls for a streamlined workflow.

Rancho Biosciences is offering 11 free manually curated datasets from the Gene Expression Omnibus for cancer, immunology, and asthma. The data is formatted to work with the TranSMART infrastructure and will work with most publicly available ETL procedures.

The Scan

Germline-Targeting HIV Vaccine Shows Promise in Phase I Trial

A National Institutes of Health-led team reports in Science that a broadly neutralizing antibody HIV vaccine induced bnAb precursors in 97 percent of those given the vaccine.

Study Uncovers Genetic Mutation in Childhood Glaucoma

A study in the Journal of Clinical Investigation ties a heterozygous missense variant in thrombospondin 1 to childhood glaucoma.

Gene Co-Expression Database for Humans, Model Organisms Gets Update

GeneFriends has been updated to include gene and transcript co-expression networks based on RNA-seq data from 46,475 human and 34,322 mouse samples, a new paper in Nucleic Acids Research says.

New Study Investigates Genomics of Fanconi Anemia Repair Pathway in Cancer

A Rockefeller University team reports in Nature that FA repair deficiency leads to structural variants that can contribute to genomic instability.