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Downloads and Upgrades: OpenEye Toolkits, Enlis Genome Research, and more


OpenEye Scientific Software has released OpenEye Toolkits v2014.Jun.

Features in this release include support for new platforms, numerous stability enhancements, and additional language support.

Enlis Genomics has released a new version of Enlis Genome Research, its sequence analysis software.

Version 1.7 includes new clinical variant and citation annotations, a new homozygous region detector tool, faster file and data import, and several bug fixes among other updates.

The developers of the Structural Classification of Proteins, or SCOPE, and ASTRAL databases have released version 2.04 of the combined resources.

This release includes bug fixes and new PDB files released before April 15, 2014

Optra Health has released Automation of Knowledge, a new web-based text mining and annotation solution for dealing with large quantites of complex biological information.

According to the company, the software uses natural language processing, machine learning, and semantics techniques to extract information from research publications or large scale biological data. It identifies biomedical entities of interest using a context specific analysis and uses efficient algorithms to process text and make information accessible to computer applications. It can also be used to create a map of relations/concepts between the bio-medical entities, and it provides annotations that can be grouped or classified based on the relationship between the entities.

Advanced Biological Laboratories has added DeepChek-HIV to BaseSpace Apps, Illumina’s online informatics applications store.

DeepChek-HIV is used for analyzing deep sequencing data from HIV. Researchers can use its tools detect variants associated with drug resistance and also for viral population tracking.

Filed under

The Scan

Not as High as Hoped

The Associated Press says initial results from a trial of CureVac's SARS-CoV-2 vaccine suggests low effectiveness in preventing COVID-19.

Finding Freshwater DNA

A new research project plans to use eDNA sampling to analyze freshwater rivers across the world, the Guardian reports.

Rise in Payments

Kaiser Health News investigates the rise of payments made by medical device companies to surgeons that could be in violation of anti-kickback laws.

Nature Papers Present Ginkgo Biloba Genome Assembly, Collection of Polygenic Indexes, More

In Nature this week: a nearly complete Ginkgo biloba genome assembly, polygenic indexes for dozens of phenotypes, and more.