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Downloads and Upgrades: GenoLogics, EBI's RDF Platform, H2G2 Genome Browser, and more


GenoLogics has launched three new cloud-based lab management products: Clarity Run Manager, Clarity Run Manager Plus, and an early access version of Clarity LIMS Silver.

These tools, which range in price, provide sample management and workflow tracking capabilities that support Illumina and Life Technologies sequencing instruments.

The genome browser group at the University of California, Santa Cruz has released an updated DGV Structural Variation track.

The European Bioinformatics Institute has launched a new Resource Description Framework platform that provides access to bioinformatics resources that support semantic web technologies. It currently holds information from six databases namely: UniProt, ChEMBL, Expression Atlas, Reactome, BioSamples, and BioModels.

NXT-Dx is making its H2G2 Genome Browser software more broadly available. Historically, the company has only allowed customers of its services to use the tool but it has now removed that restriction.

The H2G2 Genome Browser is a web-based visualization and analysis software tool that lets users upload, store, and visualize raw and mapped data from their sequencing experiments.

BioCyc 17.5 is available here.

The release includes updates to the BioCyc website, including new additions to the EcoCyc and MetaCyc databases, downloadable data files, and a downloadable Pathway Tools software/database bundle.

The Scan

Genetic Risk Factors for Hypertension Can Help Identify Those at Risk for Cardiovascular Disease

Genetically predicted high blood pressure risk is also associated with increased cardiovascular disease risk, a new JAMA Cardiology study says.

Circulating Tumor DNA Linked to Post-Treatment Relapse in Breast Cancer

Post-treatment detection of circulating tumor DNA may identify breast cancer patients who are more likely to relapse, a new JCO Precision Oncology study finds.

Genetics Influence Level of Depression Tied to Trauma Exposure, Study Finds

Researchers examine the interplay of trauma, genetics, and major depressive disorder in JAMA Psychiatry.

UCLA Team Reports Cost-Effective Liquid Biopsy Approach for Cancer Detection

The researchers report in Nature Communications that their liquid biopsy approach has high specificity in detecting all- and early-stage cancers.