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Downloads and Upgrades: Cufflinks 2.0.2, BioCyc 16.1, and more


The University of Maryland Center for Bioinformatics and Computational Biology has released Cufflinks 2.0.2.

This release addresses several bugs including minor fixes in the estimation routines for cross-replicate variability among other updates.

BioCyc version 16.1 is available here.

This release is a minor one in which the website and downloadable data files were updated, but not the downloadable software/database bundle. Furthermore, this release adds protein feature data from UniProt to BioCyc databases. These features describe metal ion binding sites, enzyme active sites, phosphorylation sites, and many other types of sites.

RefSeq 54 is now available from the National Center for Biotechnology Information via FTP.

The release incorporates genomic, transcript, and protein data available as of July 9, and includes 21,889,466 records, 16,393,342 proteins, 2,947,185 RNAs, and sequences from 17,605 different organisms.

Filed under

The Scan

Shape of Them All

According to BBC News, researchers have developed a protein structure database that includes much of the human proteome.

For Flu and More

The Wall Street Journal reports that several vaccine developers are working on mRNA-based vaccines for influenza.

To Boost Women

China's Ministry of Science and Technology aims to boost the number of female researchers through a new policy, reports the South China Morning Post.

Science Papers Describe Approach to Predict Chemotherapeutic Response, Role of Transcriptional Noise

In Science this week: neural network to predict chemotherapeutic response in cancer patients, and more.