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CGH Analytics, caCORE, Oracle Spatial Network Data Model, RefSeq 9, BioRS, Rosetta Resolver, Reactome, SkyPainter2, HIC-Up

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Agilent Technologies last week launched its Human Genome CGH Microarray and CGH Analytics software. The software provides simultaneous visualization of multiple CGH microarray profiles, statistical measures to detect aberrant regions, and other features.


The National Cancer Institute’s Center for Bioinformatics has released the caCORE Software Development Kit, a set of tools that can be used to create a software system designed using a model-driven architecture; an n-tier architecture with open APIs, controlled vocabularies, and registered metadata. The SDK is available under an open source software license at http://ncicb.nci.nih.gov/core/SDK.


Oracle has released the Oracle Spatial Network Data Model plug-in for the Cytoscape network analysis platform at http://cytoscape.org/plugins2.php. The plug-in allows Cytoscape users to visualize and analyze network data stored in Oracle Spatial Network Data Model.


The National Center for Biotechnology Information has released build 1, version 1, of the Canis familiaris (dog) genome assembly at http://www.ncbi.nlm.nih.gov/genome/guide/dog/. NCBI has also released RefSeq 9, which includes 1,310,899 proteins and sequences from 2,780 different organisms, at http://www.ncbi.nlm.nih.gov/projects/RefSeq.


Biomax Informatics has launched version 5.4 of the BioRS Integration and Retrieval System, which provides access to public and proprietary data in a distributed environment.


Rosetta Biosoftware has integrated the Affymetrix GeneChip Operating Software with version 5.0 of Rosetta Resolver. The company said that the integrated system will enable advanced interpretation of results from Affy arrays.


Version 12 of Reactome is available at http://www.reactome.org. The release includes three new modules: mitotic spindle checkpoint, protein translation termination, and the first stage of xenobiotic metabolism. The Reactome project has also released a tool called SkyPainter2, which allows users to overlay protein or gene identifiers on the reaction map or visualize microarray data.


An updated version of HIC-Up (Hetero-compound Information Center, Uppsala) is available from the University of Uppsala at http://xray.bmc.uu.se/hicup/release.html. The database now contains information on 5,384 small molecules from the Protein Data Bank (up from 4,968), along with several other new features.

Filed under

The Scan

Call to Look Again

More than a dozen researchers penned a letter in Science saying a previous investigation into the origin of SARS-CoV-2 did not give theories equal consideration.

Not Always Trusted

In a new poll, slightly more than half of US adults have a great deal or quite a lot of trust in the Centers for Disease Control and Prevention, the Hill reports.

Identified Decades Later

A genetic genealogy approach has identified "Christy Crystal Creek," the New York Times reports.

Science Papers Report on Splicing Enhancer, Point of Care Test for Sexual Transmitted Disease

In Science this week: a novel RNA structural element that acts as a splicing enhancer, and more.