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August's Bioinformatics Papers of Note


Goldberg JM, Griggs AD, et al.
Kinannote, a computer program to identify and classify members of the eukaryotic protein kinase superfamily.
Bioinformatics. 2013 Aug 13. [Epub ahead of print]

Anderson JR, Bachmeyer KM, et al.
A novel algorithm for simplification of complex gene classifiers in cancer.
Cancer Res. 2013 Aug 2. [Epub ahead of print]

Aboyoun P, Carey VJ, et al.
Software for computing and annotating genomic ranges.
PLoS Comput Biol. Epub 2013 Aug 8.

Matlock M, Swamidass SJ, Zaretzki J.
Scaffold Network Generator: A Tool for Mining Molecular Structures.
Bioinformatics. 2013 Aug 5. [Epub ahead of print]

Yau C.
OncoSNP-SEQ: a statistical approach for the identification of somatic copy number alterations from next-generation sequencing of cancer genomes.
Bioinformatics. 2013 Aug 7. [Epub ahead of print]

Good BM, Loguercio S, Su AI.
Dizeez: an online game for human gene-disease annotation.
PLoS One. 2013 Aug 7

Chiu YF, Fang YH
A Novel Support Vector Machine-Based Approach for Rare Variant Detection.
PLoS One. 2013 Aug 7

Cabanski CR, Hayes DN, et al.
BlackOPs: increasing confidence in variant detection through mappability filtering.
Nucleic Acids Res. 2013 Aug 8. [Epub ahead of print]

Aleksic J, Hu F,et al.
metabolicMine: an integrated genomics, genetics and proteomics data warehouse for common metabolic disease research.
Database (Oxford) 2013 Aug 9.

Abecasis AB, Alves RJ,et al.
inTB - a data integration platform for molecular and clinical epidemiological analysis of tuberculosis.
BMC Bioinformatics. 2013 Aug 30;14(1):264. [Epub ahead of print]

Hauser M, Mayer CE, Söding J.
kClust: fast and sensitive clustering of large protein sequence databases.
BMC Bioinformatics. 2013 Aug 15;14(1):248. [Epub ahead of print]

Bains N, Ballouz S, et al.
Gentrepid V2.0: a web server for candidate disease gene prediction.
BMC Bioinformatics. 2013 Aug 16;14(1):249. [Epub ahead of print]

Covert MW, Karr JR, Lee R.
WholeCellViz: data visualization for whole-cell models.
BMC Bioinformatics. 2013 Aug 21

Allison B, Combs S, et al.
Computational design of protein-small molecule interfaces.
J Struct Biol. 2013 Aug 17. [Epub ahead of print]

Novo FJ, Ortiz de Mendíbil I, et al.
Oncofuse: a computational framework for the prediction of the oncogenic potential of gene fusions.
Bioinformatics. 2013 Aug 24. [Epub ahead of print]

Callister SJ, Conlan S, et al.
SPOCS: software for predicting and visualizing orthology/paralogy relationships among genomes.
Bioinformatics. 2013 Aug 27. [Epub ahead of print]

Biggin PC, Vohra S
Mutationmapper: a tool to aid the mapping of protein mutation data.
PLoS One. 2013 Aug 9.

Danek A, Deorowicz S, Grabowski S
Genome compression: a novel approach for large collections.
Bioinformatics. 2013 Aug 29. [Epub ahead of print]

Bhattacharya A, Cui Y, Ziebarth JD.
Bayesian Network Webserver: a comprehensive tool for biological network modeling.
Bioinformatics. 2013 Aug 28. [Epub ahead of print]

Rescheneder P, Sedlazeck FJ, von Haeseler A.
NextGenMap: fast and accurate read mapping in highly polymorphic genomes.
Bioinformatics. 2013 Aug 30. [Epub ahead of print]

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