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August’s Bioinformatics Papers of Note

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Habermann BH, Oswald F, et al.
morFeus: a web-based program to detect remotely conserved orthologs using symmetrical best hits and orthology network scoring.
BMC Bioinformatics. 2014 Aug 6;15:263. doi: 10.1186/1471-2105-15-263.


Gan SK, Nguyen PV, Verma CS.
DNAApp: a mobile application for sequencing data analysis.
Bioinformatics. 2014 Aug 5. pii: btu525. [Epub ahead of print]


Boerwinkle E, Buxbaum JD, et al
A framework for the interpretation of de novo mutation in human disease.
Nat Genet. 2014 Aug 3. doi: 10.1038/ng.3050. [Epub ahead of print]


Bravo HC, Chelaru F, et al
Epiviz: interactive visual analytics for functional genomics data.
Nat Methods doi: 10.1038/nmeth.3038. [Epub ahead of print]


Javed A, Agrawal S, Ng PC.
Phen-Gen: combining phenotype and genotype to analyze rare disorders.
Nat Methods. 2014 Aug 3. doi: 10.1038/nmeth.3046. [Epub ahead of print]


Benson G, Byrd AL, et al
Clinical PathoScope: rapid alignment and filtration for accurate pathogen identification in clinical samples using unassembled sequencing data.
BMC Bioinformatics 2014 Aug 4;15:262. doi: 10.1186/1471-2105-15-262.


Li H.
Fast construction of FM-index for long sequence reads.
Bioinformatics 2014 Aug 8. pii: btu541. [Epub ahead of print]


An J, Lai J, et al
miRPlant: an integrated tool for identification of plant miRNA from RNA sequencing data.
BMC Bioinformatics 2014 Aug 12;15(1):275. doi: 10.1186/1471-2105-15-275.


Carr SA, Colangelo CM, et al
Panorama: A Targeted Proteomics Knowledge Base.
J Proteome Res. 2014 Aug 18. [Epub ahead of print].


Bhagwate A, Chen X, et al
HiChIP: a high-throughput pipeline for integrative analysis of ChIP-Seq data.
BMC BioInformatics 2014 Aug 15;15(1):280. [Epub ahead of print]
Arvestad L, Nystedt B, et al
BESST - Efficient scaffolding of large fragmented assemblies.
BMC BioInformatics 2014 Aug 15;15(1):281. [Epub ahead of print]
Anand N, Braun TA, et al
Cordova: Web-based management of genetic variation data.
BioInformatics 2014 Aug 14. pii: btu539. [Epub ahead of print]
Imoto S, Homma Y, et al
HapMuC: somatic mutation calling using heterozygous germline variants near candidate mutations.
BioInformatics 2014 Aug 14. pii: btu537. [Epub ahead of print]
Zhang Y, Sun Y, Cole JR.
A Scalable and Accurate Targeted Gene Assembly Tool (SAT-Assembler) for Next-Generation Sequencing Data.
PLoS Comput Biol. 2014 Aug 14;10(8):e1003737.
Förstner KU, Vogel J, Sharma CM READemption - A tool for the computational analysis of deep-sequencing-based transcriptome data.
BioInformatics 2014 Aug 13. pii: btu533. [Epub ahead of print]
Chikhi R, Gouin A, et al
MindTheGap : integrated detection and assembly of short and long insertions.
BioInformatics 2014 Aug 14. pii: btu545. [Epub ahead of print]
Bartlett PF, Bauer DC, et al
A Comparative Study of Techniques for Differential Expression Analysis on RNA-Seq Data.
PLoS One 2014 Aug 13;9(8):e103207. doi: 10.1371/journal.pone.0103207

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