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April's Bioinformatics Papers of Note


Aladjem MI, Fried JY, et al.
PathVisio-Faceted Search: An Exploration Tool for Multi-Dimensional Navigation of Large Pathways.
Bioinformatics. 2013 Apr 1. [Epub ahead of print]

Chen CK, Ruf S, et al.
TRACER: a resource to study the regulatory architecture of the mousegenome.
BMC Genomics. 2013 Apr 2.

Ning K, Su X, et al.
QC-Chain: Fast and Holistic Quality Control Method for Next-Generation Sequencing Data.
PLoS One. Epub 2013 Apr 2.

Liao Y, Smyth GK, Shi W.
The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote.
Nucleic Acids Res. 2013 Apr 4. [Epub ahead of print]

Ackermann J, Einloft J, et al.
MonaLisa - visualization and analysis of functional modules in biochemical networks.
Bioinformatics. 2013 Apr 5. [Epub ahead of print]

Harris BR, Kao HY, et al.
tmVar: A text mining approach for extracting sequence variants in biomedical literature.
Bioinformatics. 2013 Apr 5. [Epub ahead of print]

Balado F, Haughton D.
BioCode: Two biologically compatible Algorithms for embedding data in non-coding and coding regions of DNA.
BMC Bioinformatics. 2013 Apr 9;14(1):121. [Epub ahead of print]

Albrecht M, Doncheva NT, Kacprowski T.
NetworkPrioritizer: a versatile tool for network-based prioritization of candidate disease genes or other molecules.
Bioinformatics. 2013 Apr 17. [Epub ahead of print]

Chen Y, Chen R, et al.
CGAP-Align: A High Performance DNA Short Read Alignment Tool.
PLoS One. 2013 Apr 11

Chaudhary K, Chauhan JS, et al.
Computational approach for designing tumor homing peptides.
Sci Rep. 2013 Apr 5;3:1607. doi: 10.1038/srep01607.

Bedard PL, Brown AM, et al.
Clinical genomics information management software linking cancergenome sequence and clinical decisions.
Genomics. 2013 Apr 17. [Epub ahead of print]

Barakat M, Ortet P, Whitworth DE.
P2RP: a web-based framework for the identification and analysis of regulatory proteins in prokaryotic genomes.
BMC Genomics. 2013 Apr 20;14(1):269. [Epub ahead of print]

Giddings MC, Risk BA, Spitzer WJ.
Peppy: proteogenomic search software.
J Proteome Res. 2013 Apr 24. [Epub ahead of print]

Filed under

The Scan

Shape of Them All

According to BBC News, researchers have developed a protein structure database that includes much of the human proteome.

For Flu and More

The Wall Street Journal reports that several vaccine developers are working on mRNA-based vaccines for influenza.

To Boost Women

China's Ministry of Science and Technology aims to boost the number of female researchers through a new policy, reports the South China Morning Post.

Science Papers Describe Approach to Predict Chemotherapeutic Response, Role of Transcriptional Noise

In Science this week: neural network to predict chemotherapeutic response in cancer patients, and more.