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This Week in Genome Biology: Aug 12, 2009

In Genome Biology this week, research led by Katharine Webb at the Institute of Developmental Genetics in Neuherberg, Germany, showed that there are specific transcriptional networks that influence addiction. Using a model of a mutant zebrafish that doesn't respond to amphetamines, they combined microarray analysis with qPCR and in situ hybridization to identify and validate specific brain areas that responded to amphetamine in wild-type siblings. The genes affected that they found to be enriched were transcription factors involved in brain development, and the areas of the brain that responded to the drug included domains of ongoing adult neurogenesis. A minireview from Jean Lud Cadet delves further into how "addictive drugs hijack the human brain's 'reward' systems."

In other work, Tim Strom was senior author on a paper looking at SNPs in a second sequenced breed of bovine, the Fleckvieh bull. 24 gigabases of sequence reads at an average 7.4 fold depth revealed 2.44 million SNPs, a good majority of which were unknown, and 115,000 small indels. "This work provides the first single cattle genome by next-generation sequencing," they say, adding that the research will be a "valuable resource for the construction of high density oligonucleotide arrays in the context of genome-wide association studies."

In a minireview, Jeffrey Wilusz examines the literature of herpesvirus biology and cellular mRNA decay/surveillance mechanisms. "Increasing evidence suggests that viruses have evolved ways of interfacing with the cellular RNA decay machinery that aid their survival and replication," he writes, including degrading host mRNA to give the virus a competitive advantage when it comes to propagating itself. Wilusz, who is at Colorado State University, explains recent findings that show that during herpesvirus infection associated with Kaposi's sarcoma – the most common tumor in people with AIDS – mRNA degradation is linked to "hyperadenylation of transcripts and a relocalization of cytoplasmic poly(A)-binding proteins to the nucleus."

The Scan

Highly Similar

Researchers have uncovered bat viruses that are highly similar to SARS-CoV-2, according to Nature News.

Gain of Oversight

According to the Wall Street Journal, the Biden Administration is considering greater oversight of gain-of-function research.

Lasker for mRNA Vaccine Work

The Scientist reports that researchers whose work enabled the development of mRNA-based vaccines are among this year's Lasker Award winners

PLOS Papers on Causal Variant Mapping, Ancient Salmonella, ALK Fusion Test for NSCLC

In PLOS this week: MsCAVIAR approach to map causal variants, analysis of ancient Salmonella, and more.