Skip to main content
Premium Trial:

Request an Annual Quote

Organizing It All

Sequencing thousands of Icelanders takes "a lot of organization," Hakon Gudbjartsson, Decode's VP for informatics tells IEEE Spectrum.

Each person they've sequenced — a total of some 3,600 people thus far — generates around 100 gigabytes of data, Gudbjartsson says. And, he adds, databases like Oracle or MySQL don't quite make sense for this purpose.

Instead, Decode, which was bought in 2012 by Amgen, is turning to a genomically ordered relations, or GOR, database.

"It's a database that organizes the downstream data according to the position in the genome," Gudbjartsson tells IEEE Spectrum. "Whether its a SNP or… a copy number variation, anything. All the tables are basically ordered according to the genome."

By combining this genetic data with clinical and genealogical information, researchers would be able to make connections to disease.

But as IEEE Spectrum points out, they could also deduce the phenotypes of people who aren't participating in the study because of Iceland's small, closely related population. Gudbjartsson notes that researchers there have signed an agreement to never make such data inferences.

The Scan

Could Cost Billions

NBC News reports that the new Alzheimer's disease drug from Biogen could cost Medicare in the US billions of dollars.

Not Quite Sent

The Biden Administration likely won't meet its goal of sending 80 million SARS-CoV-2 vaccine doses abroad by the end of the month, according to the Washington Post.

DTC Regulation Proposals

A new report calls on UK policymakers to review direct-to-consumer genetic testing regulations, the Independent reports.

PNAS Papers on Mosquito MicroRNAs, Acute Kidney Injury, Trichothiodystrophy

In PNAS this week: microRNAs involved in Aedes aegypti reproduction, proximal tubule cell response to kidney injury, and more.