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In PNAS, Mark Gerstein and his colleagues describe a new method to quantify microbial metabolic pathways in metagenomics samples. Using data from the Global Ocean Survey, the researchers developed a multivariate approach to associate metabolic pathway usage to differences in the environment. They identified pathways used in energy conversion, amino acid metabolism, cofactor synthesis, and more.

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Nature News reports on the US National Science Foundation's investigations of undisclosed foreign ties among researchers it funds.

Researchers have developed a set of 10 principles to guide how a list of all species on earth should be put together, the Guardian reports.

Wired reports on a new firm developing a gene writing approach for therapeutic genome changes.

In Nature this week: a method called cis-X combines whole-genome and transcriptome sequencing data to identify regulatory noncoding variants, and more.