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Zygogen, NuTec Partner to Develop Zebrafish Database

NEW YORK, June 15 - Zygogen has partnered with NuTec Sciences to help build its database of zebrafish genome data, the company said Friday. 

The database, called Z-base, is currently in preliminary form, said Nina Sawczuk, CEO of Zygogen, and NuTec will help design the database, add new sequence information, and "structure it in a more friendly way."

In addition, NuTec will write algorithms for performing comparative genomics studies with the human genome. Sawczuk added that the Sanger Centre is still sequencing the zebrafish genome, and that Zygogen would add the sequence data as it becomes available.

Zygogen, of Atlanta, Ga., plans to use the database to identify genes in humans associated with diseases such as angiogenesis, neurodegenerative, and cardiovascular disease.

The company is building its database with sequence data and information from zebrafish gene expression studies that use fluorescent tags to show the effect of gene mutations and drugs. Zygogen hopes that when this information is combined into a searchable database it can be used to identify gene families relevant to human disease.

NuTec is currently building a 5,000 CPU life sciences supercomputer in Atlanta that will have the capacity of 7.5 trillion calculations per second when the machine is completed this summer.  
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