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Sunday, July 5, 2009
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  1. Genome Technology
    Meetings and Deadlines
  2. GenomeWeb Daily News
    Team Finds New Cancer Gene Fusions Using Paired End Sequencing
  3. GenomeWeb Daily News
    NIH Awards $42M for More Human Microbiome Studies
  4. Biotech Transfer Week
    Fate Therapeutics Licenses Stem-Cell Modulators for Bone Regeneration from UCLA
  5. BioArray News
    Japanese Researchers Use Fluidigm's BioMark Platform for Stem Cell Expression Studies
  1. GenomeWeb Daily News
    In Brief This Week: Roche NimbleGen; Aushon BioSystems; Saladax Biomedical; Mobidiag; Enigma Diagnostics
  2. GenomeWeb Daily News
    People In The News
  3. GenomeWeb Daily News
    Cardiff Univ. Uses $6.6M for Neuro-Genetics and Genomics Center
  4. GenomeWeb Daily News
    Genome-Wide Screen Turns Up Primate-Specific Genes
  5. GenomeWeb Daily News
    CFI's 'Omics Grants Broad in Scope
  1. The Daily Scan
    Science and Religion, Science and Atheism
  2. The Daily Scan
    This Week in Science
  3. The Daily Scan
    Lighting Up Plants' Lives
  4. The Daily Scan
    Think of It as Being in Stealth Mode
  5. The Daily Scan
    Maq Still Leading the Way
  • Young Investigator Profile

    David Mathews

    University of Rochester
    Assistant Professor

    Looking for Secondary Structure

    The University of Rochester's David Mathews is building algorithms to predict secondary structures of RNA and applying that knowledge to finding novel, noncoding RNA in the genome and uncovering what those RNAs do. In addition, he says that knowing more about secondary RNA structure might help researchers design better and more effective siRNAs. His group wants to be able to predict, from any given sequence, if there will be an RNA structure and, if so, what base pairs will form. As a bioinformatics and computational biology group, the team has developed an algorithm to detect the RNA structure common to two homologous sequences.

  • Blog

    This Week in Science

    Standards for genetic ancestry testing, SBIR program debate, Drosophila gene silencing, and more.

    July 03, 2009

    Science and Religion, Science and Atheism

    The British Council releases results of its international survey of belief in evolution, while a blogger wonders if science leads to atheism.

    July 03, 2009

    S. Brenner on C. elegans

    Sydney Brenner has a perspective on worm research and cultural shifts in science.

    July 03, 2009

    Open Science's Greatest Need Is ... Non-Scientists?

    Bloggers chat about the goals of open science and how it's being implemented.

    July 03, 2009
  • Papers of Note

    HPV testing in combination with liquid-based cytology in primary cervical screening (ARTISTIC): a randomised controlled trial
    Kitchener H, et al.

    British researchers involved in the ARTISTIC randomized clinical trial compared the effectiveness of liquid-based cytology screening with or without HPV co-testing in more than 24,000 women. Based on their results from two rounds of testing over about three years, they concluded that cytology alone was as effective as co-testing for identifying high-risk cervical intraepithelial neoplasia, or CIN lesions, pre-cancerous cell growths on the cervix. The paper appears in Lancet Oncology.


    An Integrated Genetic and Cytogenetic Map of the Cucumber Genome
    Ren Y, Zhang Z, Liu J, Staub JE, Han Y, et al.
    In a paper in PLoS ONE, researchers from the Chinese Academy of Agricultural Sciences, the China Agricultural University, and the US Department of Agriculture's Agricultural Research Service used whole genome shotgun sequencing to come up with nearly 1,000 polymorphic simple sequence repeat markers in cucumber. Using these markers, along with cytogenetic data, they then created a high-density linkage map that's expected to form the foundation for future genetic and genomic studies in cucumbers and related plants.

  • People on the Move

    Nobel Prize-winning immunologist Jean Dausset, who also was involved in the mapping of the human genome, has died at the age of 92. A Frenchman, Dausset became director the Research Unit on Immunogenetics of Human Transplantation of the National Institute of Health and Medical Research in 1968.


    Mettler-Toledo International has named Martin Madaus to serve on its board of directors. Madaus is CEO, chairman, and president of Millipore, and he formerly was chairman of Roche Diagnostics.


    Accelrys named Max Carnecchia CEO, president, and a member of the board of directors, effective immediately. He replaces Todd Johnson, who resigned from his post on June 15 after serving as an interim CEO since January. Carnecchia had previously served as president of Interwoven, as VP of global sales at Xoriant, and VP of sales and services at SmartDB.

  • Upcoming Events

    Conferences, Meetings & Deadlines

    International Conference on Intelligent Systems for Molecular Biology
    Jun 27-Jul 2 / Stockholm
    ISCB
    Genetic Alliance Annual Meeting
    Jul 17-19 / Bethesda, Md.
    Genetic Alliance
    AACC Annual Meeting
    Jul 19-23 / Chicago
    American Association for Clinical Chemistry
    Human Genetics & Genomics Conference
    Jul 19-24 / Biddeford, Maine
    Gordon Research
    more
  • Science

    Research suggests paired-end transcriptome sequencing can identify previously undetected gene fusions — even in well-characterized human cancer lines — and offer clues about which fusions may drive cancer development.
  • Business

    IDBS said that it will acquire InforSense in a bid to expand its large-scale data integration efforts and broaden its life sciences portfolio into the growth areas of biomarker development and personalized medicine.
  • Funding

    Researchers studying the microbes that live on and inside the human body will receive $42 million in new grants from the National Institutes of Health to fund the Human Microbiome Project. These new grants will continue the five-year, $140 million project, launched in 2007.
  • Genome Technology Magazine

    This coming Monday, July 6th is the deadline for NIH's Proteomics in Auditory Developmental and Disease Processes grant. That day is also the last to apply for the Integrating Lung Genetics and Genomics in Human Populations grant. Another deadline on the horizon is for proposals for the NSF grant, Genes and Genome Systems Cluster, coming up on July 12th. Check out the rest of the upcoming deadlines here.

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